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Mechanism of D-type cyclin recognition by the AMBRA1 E3 ligase receptor

Authors: Yang Wang, Ming Liu, Shan Wang, Xinyi Mai, Xi Wang, Fei Teng, Tianrui Lyu, Ming-Yuan Su, Goran Stjepanovic

Journal: SCIENCE ADVANCES

PubMed ID: 40408472

Doi: 10.1126/sciadv.adu8708

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Multi-level ROS regulation to activate innate and adaptive immune therapies

Authors: Ke-Ke Feng, Cheng-Lei Li, Yi-Fan Tu, Shi-Cheng Tian, Rui Xiong, Bai-Sheng Sa, Jing-Wei Shao

Journal: Chemical Engineering Journal

Doi: doi.org/10.1016/j.cej.2025.163429

Products & Services: Gene Synthesis

LPS-enriched interaction drives spectrum conversion in antimicrobial peptides: Design and optimization of AA16 derivatives for targeting gram-negative bacteria

Authors: Wanyang Xiao, Ruize Sun, Jietao Lou, Yanyan Xu, Xiaokun Li, Kaiyun Xin, Weijie Lu, Chenhui Sun, Tianbao Chen, Yitian Gao, Di Wu

Journal: Eur J Med Chem

PubMed ID: 40048797

Doi: 10.1016/j.ejmech.2025.117462

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Chondrocyte fatty acid oxidation drives osteoarthritis via SOX9 degradation and epigenetic regulation

Authors: Zixuan Mei, Kamuran Yilamu, Weiyu Ni, Panyang Shen, Nan Pan, Huasen Chen, Yingfeng Su, Lei Guo, Qunan Sun, Zhaomei Li, Dongdong Huang, Xiangqian Fang, Shunwu Fan, Haitao Zhang, Shuying Shen

Journal: nature COMMUNICATION

PubMed ID: 40425566

Doi: 10.1038/s41467-025-60037-4

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MechanismsofaureobasidinA inhibition and drug resistance in a fungal IPC synthase complex

Authors: Xinyue Wu , Xin Gong , Tian Xie

Journal: nature COMMUNICATION

PubMed ID: 40442105

Doi: doi.org/10.1038/s41467-025-60423-y

Products & Services: Protein and Antibody Isolation

DNA-Engineered Modular Nanovaccines Featuring Precise Topology for Enhanced Immunogenicity

Authors: Yanfei Qu, Dawei Wang, Yunlong Zhang, Fengyun Shen, Binghui Xia, Qin Xu, Qisheng Wang, Huating Kong, Ying Zhu, Lihua Wang, Itamar Willner, Xiurong Yang, Chunhai Fan, Lele Sun

Journal: ADVANCED MATERIALS

PubMed ID: 40371439

Doi: 10.1002/adma.202500577

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Deep Proteomic Profiling of the Intra-Golgi Trafficking Intermediates

Authors: Farhana Taher Sumya , Walter S Aragon-Ramirez , Vladimir V Lupashin

Journal: Molecular biology of the cell

PubMed ID: 40397568

Doi: 10.1091/mbc.E24-12-0556

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Programmatically activated DNA hydrogel microcapsules for precision therapy in inflammatory bowel disease

Authors: Peifen Lu, Hongxiu Yuan, Gang Wang, Yixi Dong, Runyu Zhao, Jia Man, Jianwei Jiao, Zhaoyin Wang, Jin Jiao

Journal: Theranostics

Doi: 10.7150/thno.111583

Products & Services: Protein and Antibody Isolation

Engineering galactose oxidase for biocatalytic synthesis of 2-(furan-2-yl)-2-oxoacetic acid, a critical precursor of cefuroxime

Authors: Tong Zhang, Hao Wei, Yunju Zhang, Tengteng Qi, Kehao Yuan, Bin Wang, Ziyan Zhang, Liangqing Chen, Qinyuan Ma, Xiuzhen Gao

Journal: Journal Pre-proof

Doi: 10.1016/j.gresc.2025.05.010

Cnidaria XIAP activates caspase-mediated cell death

Authors: Yuan Chen, Meng Wu, Zihao Yuan, Qingyue Wang, Hang Xu, Li Sun

Journal: International Journal of Biological Macromolecules

PubMed ID: 40288723

Doi: doi.org/10.1016/j.ijbiomac.2025.143427

Products & Services: Protein and Antibody Isolation

A fluorescence-based assay for measuring polyamine biosynthesis aminopropyl transferase mediated catalysis

Authors: Pallavi Singh; Jae-Yeon Choi; Weiwei Wang; Tukiet T. Lam; Philip Lechner; Christopher D. Vanderwal; Sovitj Pou; Aaron Nilsen; Choukri Ben Mamoun

Journal: The Journal of Biological Chemistry

PubMed ID: 39342998

Doi: 10.1016/j.jbc.2024.107832

Design, synthesis, and mechanism study of dimerized phenylalanine derivatives as novel HIV-1 capsid inhibitors

Authors: Xujie Zhang; Lin Sun; Megan E. Meuser; Waleed A. Zalloum; Shujing Xu; Tianguang Huang; Srinivasulu Cherukupalli; Xiangyi Jiang; Xiao Ding; Yucen Tao; Dongwei Kang; Erik De Clercq; Christophe Pannecouque; Alexej Dick; Simon Cocklin; Xinyong Liu; Peng Zhan

Journal: European Journal of Medicinal Chemistry

PubMed ID: 34592608

Doi: 10.1016/j.ejmech.2021.113848

Products & Services: Peptide Synthesis

CAMPER: mechanistic artificial intelligence for designing peptides that target MRSA persisters

Authors: Fadi Shehadeh; Biswajit Mishra; Raquel Ferrer-Espada; Anindya Basu; LewisOscar Felix; Charilaos Dellis; Narchonai Ganesan; Liyang Zhang; Andrew T. Martens; Youlian Goulev; Michael B. Sherman; Johan Paulsson; Mandar T. Naik; Paul P. Sotiriadis; Eleftherios Mylonakis

Journal: Nature Communications

PubMed ID: 41803147

Doi: 10.1038/s41467-026-70348-9

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Crystal structure of Alzheimer's disease phospholipase D3 provides a molecular basis for understanding its normal and pathological functions

Authors: Kenta Ishii; Stefan J. Hermans; Maria Eleni Georgopoulou; Tracy L. Nero; Nancy C. Hancock; Gabriela A. N. Crespi; Michael A. Gorman; Jonathan H. Gooi; Michael W. Parker

Journal: The FEBS journal

PubMed ID: 39325669

Doi: 10.1111/febs.17277

Crystal structure of Alzheimer's disease phospholipase D3 provides a molecular basis for understanding its normal and pathological functions

Authors: Kenta Ishii; Stefan J. Hermans; Maria Eleni Georgopoulou; Tracy L. Nero; Nancy C. Hancock; Gabriela A. N. Crespi; Michael A. Gorman; Jonathan H. Gooi; Michael W. Parker

Journal: The FEBS journal

PubMed ID: 39325669

Doi: 10.1111/febs.17277

Immunoinformatic strategy for developing multi-epitope subunit vaccine against Helicobacter pylori

Authors: Md. Nahian; Md. Rasel Khan; Fabiha Rahman; Hossain Mohammed Reza; Imren Bayil; Tanjum Ahmed Nodee; Tabassum Basher; Mostafizur Rahaman Sany; Rabeya Najnin Munmun; S. M. Ariful Habib; Lincon Mazumder; Mrityunjoy Acharjee; Abu Tayab Moin; Abu Tayab Moin; Abu Tayab Moin

Journal: PLoS ONE

PubMed ID: 39919064

Doi: 10.1371/journal.pone.0318750

Immunoinformatic strategy for developing multi-epitope subunit vaccine against Helicobacter pylori

Journal: PLoS ONE

PubMed ID: 39919064

Doi: 10.1371/journal.pone.0318750

De Novo Multi Mechanism Antimicrobial Peptide Design via Multimodal Deep Learning

Authors: Xiaojuan Li; Haifan Gong; Yue Wang; Yinuo Zhao; Lixiang Li; Peijing Bao; Qingzhou Kong; Jialu Fu; Boyao Wan; Yumeng Zhang; Jinghui Zhang; Jiekun Ni; Zhongxue Han; Xueping Nan; Kunping Ju; Longfei Sun; Yuerui Ma; Huijun Chang; Mengqi Zheng; Yanbo Yu; Xiaoyun Yang; Xiuli Zuo; Haina Wang; Yanqing Li

Journal: Advanced Science

PubMed ID: 41801219

Doi: 10.1002/advs.202515835

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De Novo Multi Mechanism Antimicrobial Peptide Design via Multimodal Deep Learning

Journal: Advanced Science

PubMed ID: 41801219

Doi: 10.1002/advs.202515835

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Accurate Mapping of 5-Glyceryl-methylcytosine Using Nanopore Sequencing

Authors: Linting Wang, Baodan He, Zixin Wang, Liting Kang, Jianhuang Xue, Shuanghong Yan

Journal: Anal Chem

PubMed ID: 40314134

Doi: 10.1021/acs.analchem.5c00845

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Structural basis of augmenting taurine uptake by the taurine transporter in alleviating cellular senescence

Authors: Heng Zhang, Nana Cui, Xiong Ma, H Eric Xu

Journal: Cell Research

PubMed ID: 40108449

Doi: 10.1038/s41422-025-01090-y

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N 6-methyladenosine modifications stabilize phosphate starvation response–related mRNAs in plant adaptation to nutrient-deficient stress

Authors: Kai Liu, Xiaojia Wang, Jingyi Wang, Shuman Wang, Haiyan Bai, Weiguo Dong, Lulu Qiao, Qiongli Jin, Zhonghui Zhang, Guan-Zheng Luo, Zhiye Wang

Journal: Nature Communications

PubMed ID: 40312414

Doi: 10.1038/s41467-025-59331-y

Heterologous synthesis of a simplified nitrogenase analog in Escherichia coli

Authors: Yiling A Liu, Chi Chung Lee, Kamil Górecki, Martin T Stiebritz, Calder Duffin, Joseph B Solomon, Markus W Ribbe, Yilin Hu

Journal: SCIENCE ADVANCES

PubMed ID: 40315313

Doi: 10.1126/sciadv.adw6785

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FLT201, a novel liver-directed AAV gene therapy candidate for Gaucher disease type 1

Authors: Fabrizio Comper, Carlos J Miranda, Benjamin Liou, Tihomir Dodev, Jey M Jeyakumar, Miriam Canavese, Clement Cocita, Khashayar Khoshrou, Gustavo Tiscornia, Elisa Chisari, Emmaline Stotter, Erald Shehu, Sudharsan Sridharan, I-Mei Yu, Jalpa Pandya, Jaminder Khinder, Natalie Northcott, Petya Kalcheva, Samantha Correia, Ying Sun, Allison P Dane, Rose Sheridan, Amit C Nathwani, Romuald Corbau

Journal: Molecular Therapy

PubMed ID: 40340248

Doi: 10.1016/j.ymthe.2025.05.003

Products & Services: Gene Synthesis

PP1A Modulates the Efficacy of Lenvatinib Plus ICIs Therapy by Inhibiting Ferroptosis in Hepatocellular Carcinoma

Authors: Jitong Zhou, Meng Gao, Shikun Zhang, Wing-Wa Guo, Wenzhi He, Minghe Zhang, Xi Chen, Cairang Dongzhi, Xiaomian Li, Yufeng Yuan, Weijie Ma

Journal: Advanced Science

PubMed ID: 40344394

Doi: 10.1002/advs.202501730

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Mac-1 regulates disease stage-specific immunosuppression via the nitric oxide pathway in autoimmune disease

Authors: Wei Wang , Chunzhang Cao , Vishnuprabu Durairaj Pandian , Haofeng Ye , Hongxia Chen , Li Zhang

Journal: SCIENCE ADVANCES

PubMed ID: 40344054

Doi: 10.1126/sciadv.ads3728

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T cell memory response to MPXV infection exhibits greater effector function and migratory potential compared to MVA-BN vaccination

Authors: Ji-Li Chen, Beibei Wang, Yongxu Lu, Elie Antoun, Olivia Bird, Philip G Drennan, Zixi Yin, Guihai Liu, Xuan Yao, Maya Pidoux, Adam Bates, Deshni Jayathilaka, Junyuan Wang, Brian Angus, Sally Beer, Alexis Espinosa, J Kenneth Baillie, Malcolm G Semple, ISARIC4C Investigators, Timothy Rostron, Craig Waugh, Paul Sopp, Julian C Knight, James N Fullerton, Mark Coles, Geoffrey L Smith, Alexander J Mentzer, Yanchun Peng, Tao Dong

Journal: Nature Communications

PubMed ID: 40348752

Doi: 10.1038/s41467-025-59370-5

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GzESTY as an optimized cell-based assay for initial steps in GPCR deorphanization

Authors: Luca Franchini , Joseph J Porter , John D Lueck , Cesare Orlandi

Journal: Nature Communications

PubMed ID: 40374633

Doi: 10.1038/s41467-025-59850-8

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Neoantigen enriched biomimetic nanovaccine for personalized cancer immunotherapy

Authors: Yuwei Li, Maoxin Fang, Haotian Yu, Xianglei Wang, Shiyao Xue, Zeze Jiang, Zixuan Huang, Shaoqin Rong, Xiaoli Wei, Zhigang Lu, Min Luo

Journal: Nature Communications

PubMed ID: 40404668

Doi: 10.1038/s41467-025-59977-8

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Dynamic regulation of integrin β1 phosphorylation supports invasion of breast cancer cells

Authors: James R W Conway, Omkar Joshi, Jasmin Kaivola, Gautier Follain, Michalis Gounis, David Kühl, Johanna Ivaska

Journal: Nature Cell Biology

PubMed ID: 40419795

Doi: 10.1038/s41556-025-01663-4

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Inhalable myofibroblast targeting nanoparticles for synergistic treatment of pulmonary fibrosis

Authors: Zhike Chen, Jian Yang, Qiang Zhang, Weibiao Zeng, Yi Liu, Wenxuan Hu, Linfu Chen, Jingjing Shen, Yu Miao, Zhisheng Xiao, Zhiqiang Wu, He Wang, Hui Shen, Cheng Ding, Qian Chen, Jun Zhao, Yang Yang

Journal: SCIENCE ADVANCES

PubMed ID: 40305619

Doi: 10.1126/sciadv.adv9571

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Nanofabricated Bacterial Cell Walls with Intrinsic Peroxidase-Mimicking and Sonodynamic Activities for Cancer Combination Treatment

Authors: Meng Yang, Yang Meng, Junling Li, Liya Bai, Yuanyuan Cheng, Yuanyuan Liu, Mingxin Cao, Xiaoying Yang, Yinsong Wang, Yang Liu

Journal: Adv Sci (Weinh)

PubMed ID: 40365750

Doi: 10.1002/advs.202505310

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De novo assembly of nuclear stress bodies rearranges and enhances NFIL3 to restrain acute inflammatory responses

Authors: Xiao-Qi Liu, Pan Li, Bao-Qing Gao, Heng-Le Zhu, Liang-Zhong Yang, Yang Wang, Yu-Yao Zhang, Hao Wu, Yu-Hang Pan, Lin Shan, Hongtao Yu, Li Yang, Ling-Ling Chen

Journal: Cell

PubMed ID: 40436014

Doi: 10.1016/j.cell.2025.05.003

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Deletion of the Envelope gene attenuates SARS-CoV-2 infection by altered Spike localization and increased cell-to-cell transmission

Authors: Hannah L. Fischer; Christopher Kline; W. Paul Duprex; Kevin R. McCarthy; Simon C. Watkins; James F. Conway; Zandrea Ambrose

Journal: biorxiv

PubMed ID: 40475451

Doi: 10.1101/2025.05.20.655126

A yeast-based system to study SARS-CoV-2 M pro structure and to identify nirmatrelvir resistant mutations

Authors: Jin Ou; Eric M. Lewandowski; Yanmei Hu; Austin A. Lipinski; Ryan T. Morgan; Lian M.C. Jacobs; Xiujun Zhang; Melissa J. Bikowitz; Paul Langlais; Haozhou Tan; Jun Wang; Yu Chen; John S. Choy

Journal: research square

PubMed ID: 36052369

Doi: 10.21203/rs.3.rs-1942964/v1

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A fluorescence-based assay for measuring polyamine biosynthesis aminopropyl transferase mediated catalysis

Authors: Pallavi Singh; Jae-Yeon Choi; Weiwei Wang; Tukiet T. Lam; Philip Lechner; Christopher D. Vanderwal; Sovitj Pou; Aaron Nilsen; Choukri Ben Mamoun

Journal: The Journal of Biological Chemistry

PubMed ID: 39342998

Doi: 10.1016/j.jbc.2024.107832

A fluorescence-based assay for measuring polyamine biosynthesis aminopropyl transferase mediated catalysis

Authors: Pallavi Singh; Jae-Yeon Choi; Weiwei Wang; Tukiet T. Lam; Philip Lechner; Christopher D. Vanderwal; Sovitj Pou; Aaron Nilsen; Choukri Ben Mamoun

Journal: The Journal of Biological Chemistry

PubMed ID: 39342998

Doi: 10.1016/j.jbc.2024.107832

Prime editing functionally corrects cystic fibrosis-causing CFTR mutations in human organoids and airway epithelial cells

Authors: Mattijs Bulcaen; Ph line Kortleven; Ronald B. Liu; Giulia Maule; Elise Dreano; Mairead Kelly; Marjolein M. Ensinck; Sam Thierie; Maxime Smits; Matteo Ciciani; Aurelie Hatton; Benoit Chevalier; Anabela S. Ramalho; Xavier Casadevall i Solvas; Zeger Debyser; Fran ois Vermeulen; Rik Gijsbers; Isabelle Sermet-Gaudelus; Anna Cereseto; Marianne S. Carlon

Journal: Cell Reports Medicine

PubMed ID: 38697102

Doi: 10.1016/j.xcrm.2024.101544

Prime editing functionally corrects cystic fibrosis-causing CFTR mutations in human organoids and airway epithelial cells

Journal: Cell Reports Medicine

PubMed ID: 38697102

Doi: 10.1016/j.xcrm.2024.101544

Generative -hairpin design using a residue-based physicochemical property landscape

Authors: Vardhan Satalkar; Gemechis D. Degaga; Wei Li; Yui Tik Pang; Andrew C. McShan; James C. Gumbart; Julie C. Mitchell; Matthew P. Torres

Journal: Biophysical Journal

PubMed ID: 38297834

Doi: 10.1016/j.bpj.2024.01.029

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Generative -hairpin design using a residue-based physicochemical property landscape

Authors: Vardhan Satalkar; Gemechis D. Degaga; Wei Li; Yui Tik Pang; Andrew C. McShan; James C. Gumbart; Julie C. Mitchell; Matthew P. Torres

Journal: Biophysical Journal

PubMed ID: 38297834

Doi: 10.1016/j.bpj.2024.01.029

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Generative -hairpin design using a residue-based physicochemical property landscape

Authors: Vardhan Satalkar; Gemechis D. Degaga; Wei Li; Yui Tik Pang; Andrew C. McShan; James C. Gumbart; Julie C. Mitchell; Matthew P. Torres

Journal: Biophysical Journal

PubMed ID: 38297834

Doi: 10.1016/j.bpj.2024.01.029

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SIRT2-mediated deacetylation of LCK governs the magnitude of T cell receptor signaling

Authors: Imene Hamaidi; Pingyan Cheng; Soo Young Jun; Alak Manna; Min-Hsuan Wang; Anh Nguyen; Ismail Can; Min G. Zhang; Odesha O. Taylor; Luis Uriel Lopez Bailon; Bin Fang; Bradford Perez; Ben C. Creelan; Andriy Marusyk; Dongjun Shin; Tae Hyun Hwang; Anders E. Berglund; Virginia S. Shapiro; Haitao M. Ji; Jos R. Conejo-Garcia; Sungjune Kim

Journal: nature immunology

PubMed ID: 41611868

Doi: 10.1038/s41590-025-02377-3

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Structure-guided design of endosomolytic chloroquine-like lipid nanoparticles for mRNA delivery and genome editing

Authors: Zhen Liu, Jiacai Wu, Ning Wang, Yongqi Lin, Ruiteng Song, Min Zhang, Bin Li

Journal: Nature Communications

PubMed ID: 40335474

Doi: 10.1038/s41467-025-59501-y

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LKB1 regulates JNK-dependent stress signaling and apoptotic dependency of KRAS-mutant lung cancers

Authors: Chendi Li, Mohammed Usman Syed, Anahita Nimbalkar, Yi Shen, Melissa D Vieira, Cameron Fraser, Zintis Inde, Xingping Qin, Jian Ouyang, Johannes Kreuzer, Sarah E Clark, Grace Kelley, Emily M Hensley, Robert Morris, Raul Lazaro, Brian Belmonte, Audris Oh, Makeba Walcott, Christopher S Nabel, Sean Caenepeel, Anne Y Saiki, Karen Rex, J Russell Lipford, Rebecca S Heist, Jessica J Lin, Wilhelm Haas, Kristopher Sarosiek, Paul E Hughes, Aaron N Hata

Journal: Nature Communications

PubMed ID: 40316540

Doi: 10.1038/s41467-025-58753-y

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Structure and mechanism of human vesicular polyamine transporter

Authors: Yi Guo, Ge Yang, Haijiao Liu, Jin Chai, Jie Chen, John Shanklin, Qun Liu, Bin Liu, Min Lu

Journal: Nature Communications

PubMed ID: 40319071

Doi: 10.1038/s41467-025-59549-w

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A hidden cysteine in Fis1 targeted to prevent excessive mitochondrial fission and dysfunction under oxidative stress

Authors: Suman Pokhrel, Gwangbeom Heo, Irimpan Mathews, Shun Yokoi, Tsutomu Matsui, Ayori Mitsutake, Soichi Wakatsuki, Daria Mochly-Rosen