: Tyrosine-based radical transfer plays an important role in photosynthesis, respiration, and DNA synthesis. Radical transfer can occur either by electron transfer (ET) or proton coupled electron transfer (PCET), depending on the pH. Reversible conformational changes in the surrounding protein matrix may control reactivity of radical intermediates. De novo designed Peptide A is a synthetic 18 amino-acid βhairpin, which contains a single tyrosine (Y5) and carries out a kinetically significant PCET reaction between Y5 and a crossstrand histidine (H14). In Peptide A, amide II′ (CN) changes are observed in the UV resonance Raman (UVRR) spectrum, associated with tyrosine ET and PCET; these bands were attributed p... More
: Tyrosine-based radical transfer plays an important role in photosynthesis, respiration, and DNA synthesis. Radical transfer can occur either by electron transfer (ET) or proton coupled electron transfer (PCET), depending on the pH. Reversible conformational changes in the surrounding protein matrix may control reactivity of radical intermediates. De novo designed Peptide A is a synthetic 18 amino-acid βhairpin, which contains a single tyrosine (Y5) and carries out a kinetically significant PCET reaction between Y5 and a crossstrand histidine (H14). In Peptide A, amide II′ (CN) changes are observed in the UV resonance Raman (UVRR) spectrum, associated with tyrosine ET and PCET; these bands were attributed previously to a reversible change in secondary structure. Here, we use molecular dynamics simulations to define this conformational change in Peptide A and its H14-tocyclohexylalanine variant, Peptide C. Three different Y5 charge states, tyrosine (YH), tyrosinate (Y−), and neutral tyrosyl radical (Y·), are considered. The simulations show that Peptide A-YH and A-Y− retain secondary structure and noncovalent interactions, whereas A-Y· is unstable. In contrast, both Peptide C-Y− and Peptide C-Y· are unstable, due to the loss of the Y5-H14 π−π interaction. These simulations are consistent with previous UVRR experimental results on the two β-hairpins. Furthermore, they demonstrate the ability of simulations using fixed-charge force fields to accurately capture redox-linked conformational dynamics in a β-strand peptide.
