NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,888.3 |
| Mean read quality |
17.6 |
| Median read length |
6,391.0 |
| Median read quality |
20.1 |
| Number of reads |
6,559.0 |
| Read length N50 |
7,755.0 |
| STDEV read length |
4,131.6 |
| Total bases |
38,621,465.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6559 (100.0%) 38.6Mb |
| >Q7 |
6559 (100.0%) 38.6Mb |
| >Q10 |
6559 (100.0%) 38.6Mb |
| >Q12 |
6335 (96.6%) 37.4Mb |
| >Q15 |
5841 (89.1%) 34.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.3 (688) |
| 2 |
31.6 (743) |
| 3 |
30.9 (648) |
| 4 |
30.5 (776) |
| 5 |
30.3 (1117) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
53982 (10.5) |
| 2 |
46638 (21.8) |
| 3 |
38867 (19.9) |
| 4 |
38860 (22.2) |
| 5 |
38799 (19.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot